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Habitat Type: Coastal lagoons
Habitat Type: Coastal lagoons
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Written by Oliver Lewis
Updated over 9 months ago

© Marathon CC BY-SA 2.0

The following is a short summary of the habitat type and how to create/enhance it to a "good" condition. For an informed position, please refer to official up-to-date UKHAB documentation or the UK Government's Condition Assessment Sheet.

Coastal Lagoons are expanses of shallow coastal salt water, of varying salinity and water volume, wholly or partially separated from the sea by sand banks or shingle, or, less frequently, by rocks.

Landscape and Ecological Context

Salinity may vary from brackish water to hypersalinity depending on rainfall, evaporation and through the addition of fresh seawater from storms, temporary flooding of the sea in winter or tidal exchange. With or without vegetation of seagrasses or charophytes. Salt basins and salt ponds may also be considered as lagoons, providing they had their origin on a transformed natural old lagoon or on a saltmarsh, and are characterised by a minor impact from exploitation

How to Create / Enhance to a "Good" condition

There are a set of criteria that are used to judge the condition of this habitat. These are listed below.

Indicator

Good (3 points)

Moderate (2 points)

Poor (1 point)

A

Presence and abundance of invasive non-native species

Not more than one invasive non-native species is ‘Occasional’ on the SACFOR scale3; or is occupying more than 1% of the habitat. No high-risk species indicative of suboptimal condition present, see Footnote 4.

No invasive non-native species are present above ‘Frequent’ on the SACFOR scale3; or they occupy between 1-10% of the habitat. No high-risk species indicative of suboptimal condition present, see Footnote 4.

One or more invasive non-native species ‘Abundant’ on the SACFOR scale3; they occupy more than 10% of the habitat; or a high-risk species indicative of suboptimal condition is present – GB Non-native Species Secretariat should be notified, see Footnote 4.

B

Water Quality

No visual evidence of pollution. There are no nuisance algal growths that are likely to be attributable to nutrient enrichment. Consider seasonality of survey timing5.

Visual evidence of low to moderate levels of pollution. Elevated algal growth with increases in cover that may indicate nutrient enrichment. Consider seasonality of survey timing5.

Visual evidence of high algal growth that is indicative of nutrient enrichment. Signs of eutrophication that would impede bird feeding. Consider seasonality of survey timing5.

C

Non-natural structures and direct human impacts

No evidence of impacts from direct human activities, or they occupy <1% of the habitat area (for example, pontoons, moorings, boats, crab tiles, bait digging or anchoring scars).

Evidence of impacts from direct human activities occupies 1-10% of the habitat area (for example, pontoons, moorings, boats, crab tiles, bait digging or anchoring scars).

Evidence of impacts from direct human activities occupies >10% of the habitat area (for example, pontoons, moorings, boats, crab tiles, bait digging or anchoring scars).

D

Litter (when examining a beach strandline, mean high water line or intertidal rocky shore)

Following the Marine Conservation Society (MCS) beach litter survey method, the number of items of litter does not exceed 0.0036 m−1 min−1 person−1, equivalent to up to 20 items per person per 100 m per hour. See Footnote 6 for details.

Following the MCS beach litter survey method, the number of items of litter does not exceed 0.0078 m−1 min−1 person−1, equivalent to between 21 and 47 items per person per 100 m per hour. See Footnote 6 for details.

Following the MCS beach litter survey method, the number of items of litter exceeds 0.0078 m−1 min−1 person−1, equivalent to more than 47 items per person per 100 m per hour. See Footnote 6 for details.

E

Salinity

Salinity is between 15 - 40 ppt.

Salinity values are close to (but still within) the ends of range acceptable for lagoons (15 - 40 ppt).

Salinity values are either hypersaline >40 ppt or hyposaline <15 ppt.

F

Isolating barrier

Fully functional and permitting tidal exchange.

Slightly damaged but some water exchange still occurring.

Not functioning. No water exchange occurring making the lagoon hyposaline.

G

Physical damage of lagoon banks

No physical damage present7.

Only small, isolated patches of physical damage present7.

Evidence of significant physical damage7.

H

Water clarity

Water is clear.

Water clarity is reduced.

Water is turbid and water clarity is poor (not just after heavy rain).

TOTAL SCORE 18-24 (75-100%) = GOOD CONDITION

TOTAL SCORE 12-17 (50-75%) = MODERATE CONDITION

TOTAL SCORE 8-11 (0-50%) = POOR CONDITION

Footnotes

Footnote 1 – The extent of the lagoon waterbody should be recorded at high tide. This should be assessed at the end of the summer (late August – early September) and gives an indication of the amount of water that is present at all times of year. It should be noted that some lagoons are naturally very shallow.

Footnote 2 - Examples of species adapted to lagoons can be found in Bamber (2010): BAMBER, R.N. (2010) Coastal saline lagoons and the Water Framework Directive [online]. Natural England Commissioned Reports, Number 039. Available from:

For assessment of species characteristic of anoxic environments, for example presence of Capitellid worms, further information on the SACFOR scale can be found on the JNCC website at: JNCC (No date) SACFOR abundance scale used for both littoral and sublittoral taxa from 1990 onwards [online]. Available from:

Footnote 3 - Abundances estimated using SACFOR scales details available here: JNCC (No date) SACFOR abundance scale used for both littoral and sublittoral taxa from 1990 onwards [online]. Available from:

Use the non-native species list available here:

DEFRA (2022) UK Marine Non-Indigenous Species Priority List (updated 2020) [online]. Available on:

Footnote 4 - High-risk species indicative of suboptimal condition at time of publication include:
• Ficopomatus enigmaticus -Trumpet tube worm
• Styela clava - Asian tunicate; leathery sea squirt, club tunicate
• Corella eumyota - Orange-tipped sea squirt
• Grateloupia turuturu - Devil’s tongue weed, gracie, red menace and red tide
• Undaria pinnatifida - Asian kelp, wakame
• Schizoporella japonica - Orange ripple bryozoan
•Sargassum muticum - Wire weed
• Hemigrapsus sanguineus - Asian shore crab

Please check for updates of high-risk species.

Footnote 5 - Peak bloom time is July – September.

Footnote 6 - Please use the method as set out in Nelms et al (2017) to identify litter m−1 min−1 person−1, which is summarised below:
Collect litter along a linear transect parallel with the strandline, located between the back of the beach and the strandline. The transect should be 100 m long. Assign gathered items of litter to one of 101 item categories, and further classify them into 12 material groups (plastic, polystyrene, rubber, cloth, metal, medical, sanitary, faeces, paper, wood, glass, pottery or ceramic) using MCS classifications. Following this, record and sum all anthropogenic litter items and remove them from the beach. Litter identification guides may be useful, please see Nelms et al (2017) for more details on the method:
NELMS, S.E. ET AL. (2017) Marine anthropogenic litter on British beaches: A 10-year nationwide assessment using citizen science data. Science of the Total Environment [online], 579. Available from:

The indicator thresholds for litter are based on the methods in Van Loon et al. (2020), which is guidance developed within the Common Implementation Strategy for the Marine Strategy Framework Directive (MSFD) by the MSFD Technical Group on Marine Litter.

VAN LOON, W. ET AL. (2020). A European Threshold Value and Assessment Method for Macro Litter on Coastlines. EUR 30347 EN, Publications Office of the European Union, Luxembourg. [online] Available from:

Footnote 7 - Sources of physical damage include: excessive poaching, damage from machinery use, damaging management or public access activities.

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