To apply manual payments to invoices in batches you would to go to the Billing tab > Invoices > Select invoices for which you have received payments > Click the top drop down menu > Select Pay Invoices. From here, it will list all the payers/invoices selected and the payment amount will default to the amount of the invoice and their default payment method. If either the payment amount, method, or payment date is different, you can change this as well as add in check number, deposit date and any comments. Once you are done, click Save Payments. 

To apply manual payments to invoices for one payer, you would go to Billing > Overview > go to the payer's account > Click the down arrow in the payer's billing account > Click Add Payment (if you have Payment Processing turned on, select Manual Payment) > Select the check box beside the invoice to pre-populate the amount of the invoice and to apply the payment. If either the payment amount, method or payment date is different, you can change this as well as add in check number, deposit date and any comments. Once you are done, click Save Payment. 

Watch our tutorial video!