If you have a single paye scheme to close down, follow our guidance here.
If you have a company which shares a PAYE reference with another company, i.e. Weekly & Monthly, in order to close each frequency and submit to HMRC, you will need to remove the PAYE reference from one of the companies first.
To remove the PAYE reference from a company, follow the below steps;
From the company dashboard, click Settings.
Click Payroll settings.
Scroll down to the references and updates block then click Edit.
Remove the Tax Office reference number.
Choose Save.