Open the Compounds Manager.
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Locate and click the entry for the desired compound in the left-hand sidebar listing or scroll down the window to the description fields for the desired compound.
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Click the flag icon to the upper right of the compound description fields.
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​Note that flagging is only visible within the Rowan Patents integrated drafting environment. None of the data exported for filing will indicate which compounds have been flagged.
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To unflag a flagged compound, click the flag icon again.