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Make mixtures

Core elements technical notes

Updated over 3 years ago

Abstract

Making mixtures forms an integral part of science. Mixtures range in complexity, from simple buffers to complex mixtures with numerous components such as media compositions or PCR mastermixes.

This technical note outlines a workflow where mixtures were made by specifying the mixture composition and the order of liquid addition using the Make Mixtures element. The workflow was executed on three liquid handlers: a Gilson PIPETMAX 268, a Hamilton Microlab STAR and a Tecan Freedom EVO. When using the Make Mixtures element, Synthace automatically calculates mixture volumes when target and stock concentrations are provided to prevent human-error. This workflow has been used to validate liquid handling accuracy for the volumes of liquid (tartrazine) transferred for mixtures, and provides a starting point for liquid handling optimization should it be required.

Materials and methods

Description of workflow executed

Within this workflow (Figure 1), six mixtures (Mix 1-6) were made over two plates (Plate 1 and Plate 2). Each mixture was made from three representative components: (1) diluent (reverse osmosis (RO) water); (2) additive (RO Water), and; (3) tartrazine, where the target concentration of tartrazine was varied in each mixture ranging from 0.2-0.1 mM in a total final volume of 200 µl.

Figure 1: Make Mixture workflow in Synthace. This workflow describes the method for making mixtures over three automation devices. All liquids required to make the mixtures are defined in the Define Liquids And Plates element whilst the mixture definitions are described within the Make Mixtures element.

Eight replicates of each mixture were prepared on two replicate plates (16 replicates in total) to demonstrate intra- and interplate variability respectively (Figure 2). This same workflow is executed over three devices, namely a Gilson PIPETMAX 268, a Hamilton Microlab STAR and a Tecan Freedom EVO.

Figure 2. Execution Details Preview in Synthace. Users can simulate their workflows, preview and verify their experiments in silico prior to physical execution, demonstrated here on the Hamilton Microlab STAR.

Liquid handling and data acquisition

Labware information and estimated run times for each of the liquid handling devices is shown in Table 1. The workflow was run on all three devices on the same day. Tartrazine absorbance was measured using a BMG Labtech CLARIOstar microplate reader at 425 nm (Tartrazine 𝜆max), and baseline subtraction performed with absorbance at 620 nm. Data was processed and graphs were generated by a python script in Jupyter Notebook and can be accessed from the Downloads section at the end of this article.

Device

Tip type used

Tip (Part #)

Tip #

Plates used (Cat. #)

Estimated Execution Time

Gilson PIPETMAX 268

PIPETMAN DIAMOND Tips Blister DS200ST

F172311

128

96 deep well V-bottom plate (S1896-2110, Starlab);

96 well flat bottom plate (655 161, Greiner)

13 min 09 sec

Hamilton Microlab STAR

300 uL CO-RE Tips;

50 uL CO-RE tips

235938

235979

128

29 min 16 sec

Tecan Freedom EVO

Tecan Pure Tips (LiHa) 200uL

30000627

128

14 min 30 sec

Table 1: Liquid handling information

Results

Independent measurements, and intra- and interplate variability for making mixtures with different concentrations of tartrazine as one of the components of the mixture were calculated for samples prepared across the different devices tested (Figure 3).

The average intraplate coefficient of variance (CV) was 3.68% (Glison PIPETMAX 268), 1.66% (Hamilton Microlab STAR) or 3.23% (Tecan Freedom EVO), while average interplate CV was 1.26% (Glison PIPETMAX 268), 1.37% (Hamilton Microlab STAR) and 0.86% (Tecan Freedom EVO).

Figure 3: Absorbance data for mixtures prepared across three devices. Corrected absorbance values of tartrazine for individual mixtures with decreasing concentrations made by liquid handlers; (A) Gilson PIPTETMAX 268, (B) Hamilton Microlab STAR and (C) Tecan Freedom EVO. Each data point represents an individual replicate for the mixture made per plate. Coefficient of variation (% CV) for each set of replicates on each plate, (D) intraplate variation, and across both plates, (E) interplate variation. Dashed horizontal lines represent Synthace internal validation standards for the % CV maximum thresholds.

Conclusions

  1. Synthace enables scientists to easily automate protocols for making mixtures over numerous devices with the same workflow.

  2. Using readily available liquid policies for liquid handling from Synthace, high precision and low variability could be demonstrated across all devices for all mixtures regardless of the target tartrazine concentration.

  3. We demonstrate absorbance data which indicate reliable and precise tartrazine transfer when making mixtures of varying target concentrations.

  4. We demonstrate intra- and interplate variability across all three liquid handlers, with % CV below or close to the Synthace internal 5% intraplate CV threshold and the 2.5% interplate CV threshold.

  5. Automated liquid handling reduces repetitive tasks and increases precision, freeing up researchers’ time.

Downloads

Workflow

The following file contains the workflow that was discussed in this technical note. To download the file, right-click the button, then select Save as.

After you download the file, complete the following steps.

  1. Create a workflow from the file. To learn how, click here.

  2. Select the device on which you want to run the workflow. To learn how, click here.

  3. Select a default plate type. To learn how, click here.

Raw data

The following file contains the raw data that was discussed in this technical note. To download the file, right-click a button, then select Save as.

Data processing scripts

If you want to process the raw data in the way that was discussed in this technical note, download the Jupyter Notebook or Python scripts. You must edit the scripts to point at the directory that contains the raw data.

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